PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028089-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 336aa    MW: 37165.2 Da    PI: 5.5081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028089-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13104154255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h  +Er+RR+++N+ ++ Lr l+P     + k+ + a+i   +v+YIk+Lq
  WALNUT_00028089-RA 104 STSHITVERNRRKQMNEHLSVLRALMPCF---YVKRGDQASIIGGVVDYIKELQ 154
                         689*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.761102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16103176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-13103158No hitNo description
PfamPF000102.1E-10104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-13105165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGDILSDFFQ EHELGDTNLA EDDLFSIFES LESVAEFPPN DHEVVVKATK EGEETGRLVS  60
QKSTSSSAFQ ESESELEPSP KSKRLKLAGM TSWEEANPEG QTRSTSHITV ERNRRKQMNE  120
HLSVLRALMP CFYVKRGDQA SIIGGVVDYI KELQQVLQSL EAKKQRKVYS EVLSPRLVSS  180
PRPSPLSPRK PPLSPRLNLP ISPRTPQPSS PYRSKLQQGY LSPTMASSIE PSPTSSSTTS  240
ITDNVINELV ANVKSPIADV EVKFSGPNLL LKTVSPRIPG QAMKIISALE DLSLEILKVS  300
ISTVDETMRN SFTIKIGIEC QLSAEELAHQ IQQTFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1027422e-87KM102742.1 Vitis vinifera clone 1 speechless (SPCH) mRNA, complete cds.
GenBankKM1027432e-87KM102743.1 Vitis riparia clone 3 speechless (SPCH) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038955.11e-173Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ700C71e-113SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A061G1J31e-173A0A061G1J3_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGVIT_16s0050g02500.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.13e-99bHLH family protein